BioMCP
Unified MCP access to biomedical literature, clinical trials, genes, variants, and drugs.
BioMCP
BioMCP is a Model Context Protocol server that gives AI assistants and researchers unified access to trusted biomedical data sources through a single command grammar.
One query can fan out across biomedical literature (PubTator3 and Europe PMC, with an optional Semantic Scholar leg) and pivot between genes, variants, drugs, diseases, pathways, proteins, and articles, plus clinical-trial and variant databases — returning compact, evidence-oriented results over live public data with local study analytics.
It is intended for researchers, clinicians, and agents who need to search and cross-reference biomedical evidence without rebuilding a workflow for each source.
Compromise signals — malicious or tampered code (leaked secrets, backdoors, a dropped executable) — reduce the score, and known dependency CVEs carry a bounded penalty (they warrant review but never QUARANTINE — update the dependency to clear). Other dangerous-by-capability traits are risk surface, expected for some capabilities. Every finding is mapped to its OWASP control below.
Findings mapped to the OWASP Top 10 for LLM Applications (2025) and the OWASP Machine Learning Security Top 10. Expand any flagged control for the exact findings — compromise reduces the score; expected/risk-surface do not.
The same gate an agent runs before installing (POST /api/v1/trust/biomcp-server/check). Click a policy:
Consume BioMCP programmatically. Authenticate with an API key or session — see Authorize an agent.
# Agents: CHECK BEFORE YOU INSTALL (no auth) — score, grade, level, capability manifest
curl https://ai-supply.store/api/v1/trust/biomcp-server
# Gate against your org policy (returns { pass, violations })
curl -X POST https://ai-supply.store/api/v1/trust/biomcp-server/check \
-H "Content-Type: application/json" \
-d '{"minGrade":"B","denyPermissions":["shell"],"denyUnknownEgress":true}'
# CLI
npx ai-supply add biomcp-server
# REST (install → download)
curl -X POST https://ai-supply.store/api/v1/listings/biomcp-server/install \
-H "Authorization: Bearer $AIM_KEY"
# MCP tool
install_listing({ "slug": "biomcp-server" })OpenAPI spec →Curated mirror — latest upstream source. See the repository for tagged releases.